prokka
https://github.com/tseemann/prokka
Perl
:zap: :aquarius: Rapid prokaryotic genome annotation
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- Issues
- Can prokka be used for transcriptome annotation?
- rRNA not well annotated with Barrnap
- gbk file is incompatible with Biopython
- Adding The Virulence Factor Database to Prokka?
- Output KOs
- EC_number and gene don't match each other
- Warning message related to prodigal
- tbl2asn disable by default
- Proposing a few changes
- prokka and spades output
- Docs
- Perl not yet supported