prokka
https://github.com/tseemann/prokka
Perl
:zap: :aquarius: Rapid prokaryotic genome annotation
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- Issues
- Gene name from Mitochondria & NCBI annotation submission
- mRNA created for misc_RNA or tRNA or RNA and reported as duplicated by the ENA validator
- File is not readable non-empty FASTA file error
- XMFA file format for mauve
- Fragmented gene annotations
- no names for CDS
- prokka-genbank_to_fasta_db error
- Speed up overlap lookup in CDS stage
- Don't require entire BioPerl installation
- Add note about minimum Perl version to README.md
- Docs
- Perl not yet supported