prokka
https://github.com/tseemann/prokka
Perl
:zap: :aquarius: Rapid prokaryotic genome annotation
Triage Issues!
When you volunteer to triage issues, you'll receive an email each day with a link to an open issue that needs help in this project. You'll also receive instructions on how to triage issues.
Triage Docs!
Receive a documented method or class from your favorite GitHub repos in your inbox every day. If you're really pro, receive undocumented methods or classes and supercharge your commit history.
Perl not yet supported1 Subscribers
Add a CodeTriage badge to prokka
Help out
- Issues
- Argument "1.7.8" isn't numeric in numeric lt (<) at /home/g/miniconda3/bin/prokka line 259.
- The bacterial genome sequence file (.fa) sequence name is too long, resulting in the wrong format of the gbk file
- CPU utilization of Prokka
- Looking for 'minced' - found /opt/homebrew/bin/minced
- File writing error
- Genes missing /gene field in .gbk output
- Rabies genome annotation
- Prokka needs blastp 2.2 or higher.
- Some difference using --kingdom option
- Annotate several genomes in FASTA format
- Docs
- Perl not yet supported