prokka
https://github.com/tseemann/prokka
Perl
:zap: :aquarius: Rapid prokaryotic genome annotation
Triage Issues!
When you volunteer to triage issues, you'll receive an email each day with a link to an open issue that needs help in this project. You'll also receive instructions on how to triage issues.
Triage Docs!
Receive a documented method or class from your favorite GitHub repos in your inbox every day. If you're really pro, receive undocumented methods or classes and supercharge your commit history.
Perl not yet supported1 Subscribers
Add a CodeTriage badge to prokka
Help out
- Issues
- check blast version fails due to v2.10 which is recognized as <2.2
- Databases not indexed; after indexing they *still* aren't indexed? Or are they missing?
- Prokka is not generating all the files while invoking prokka using shell script but working fine while running directly from commandline, why?
- Can prokka annotate only from --protein file?
- Issue after conda install: Can't locate Bio/Root/Version.pm in @INC (you may need to install the Bio::Root::Version module)
- Argument "1.7.7" isn't numeric in numeric
- Fragmented gene annotations
- prokka-genbank_to_fasta_db error
- Can prokka be used for transcriptome annotation?
- rRNA not well annotated with Barrnap
- Docs
- Perl not yet supported