ncov
https://github.com/nextstrain/ncov
Python
Nextstrain build for novel coronavirus (nCoV)
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- Issues
- Memory resource definitions
- Memory resource constraints are not passed to IQ-TREE (via `augur tree`)
- `annotate_metadata_with_index` raises `ValueError` when dtypes don't match
- Remove whitespace indents from large Auspice JSONs
- Fill in more lat/long data from the OpenStreetMap name-to-location API
- Visualise omicron recombinants
- Fetching Open workflow intermediate build assets over S3 gives a 403 error in a really simple setup
- Document color schemes
- Update configuration guide
- subsampling_scheme min-date and max-date don't work
- Docs
- Python not yet supported