ncov
https://github.com/nextstrain/ncov
Python
Nextstrain build for novel coronavirus (nCoV)
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Help out
- Issues
- Questions from a custom Nextstrain builder
- BUG: Nucleotide and corresponding amino acid mutation occasionally on different branch
- Keep small number of BA.2 on the tree and not filtered by clock_filter
- Standardise parsing of missing / unknown metadata values
- Add parameter to enable overriding tree args
- UnicodeDecodeError in sanitize_metadata
- Remove redundant include strains
- Move subsampling by proximity into augur
- Allow users to turn off min and max date filters for frequencies
- #657 Validate input files from config file
- Docs
- Python not yet supported