ncov
https://github.com/nextstrain/ncov
Python
Nextstrain build for novel coronavirus (nCoV)
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- Issues
- Expose epiweek annotations as color-by and filter options in main Nextstrain builds
- Build names do not allow "." characters
- Surface insertion/frameshifts in SC2 builds
- Set recommended minimum branch length for IQ-TREE
- add submitters to footer filters;
- strains related to specific country
- Error: Tree building failed
- Update ncov workflow diagram in documentation
- Implement subsampling via a script
- augur refine crashes when the root sequence is not included in the build
- Docs
- Python not yet supported