ncov
https://github.com/nextstrain/ncov
Python
Nextstrain build for novel coronavirus (nCoV)
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- Issues
- representation of a nuc conversion do not point a conversion on the genome
- Introduce minimum augur version check
- can't install to native
- after skip_diagnostics: true modification. next strain fails
- Discussion: Do we still need the `snp_clusters` param for `diagnostics` rule?
- Fix annotate metadata with numeric strains
- Memory resource constraints are not passed to IQ-TREE (via `augur tree`)
- Remove whitespace indents from large Auspice JSONs
- Fetching Open workflow intermediate build assets over S3 gives a 403 error in a really simple setup
- Questions from a custom Nextstrain builder
- Docs
- Python not yet supported