ncov
https://github.com/nextstrain/ncov
Python
Nextstrain build for novel coronavirus (nCoV)
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- Issues
- BUG: Nucleotide and corresponding amino acid mutation occasionally on different branch
- Add parameter to enable overriding tree args
- UnicodeDecodeError in sanitize_metadata
- Set recommended minimum branch length for IQ-TREE
- add submitters to footer filters;
- augur refine crashes when the root sequence is not included in the build
- Frequency chart shows dates well past the dates shown in the page header and metadata download
- Allow users to disable clock filter in augur refine rule
- Issues/Features for Build Shepherd `parse_metadata` Script
- Different tree topologies when running the same data
- Docs
- Python not yet supported