prokka
https://github.com/tseemann/prokka
Perl
:zap: :aquarius: Rapid prokaryotic genome annotation
Triage Issues!
When you volunteer to triage issues, you'll receive an email each day with a link to an open issue that needs help in this project. You'll also receive instructions on how to triage issues.
Triage Docs!
Receive a documented method or class from your favorite GitHub repos in your inbox every day. If you're really pro, receive undocumented methods or classes and supercharge your commit history.
Perl not yet supported1 Subscribers
Add a CodeTriage badge to prokka
Help out
- Issues
- Continue interrupted prokka run
- inference using ISFinder fails NCBI submission
- Prokka contigs too long
- check blast version fails due to v2.10 which is recognized as <2.2
- Update README.md
- How higher quallity annotations can we expect?
- Rfam 14.3 is out
- Databases not indexed; after indexing they *still* aren't indexed? Or are they missing?
- Prodigal: don't set metagenome mode if training file given
- Make it possible to set a coverage and/or identity threshold that only covers proteins.faa when using --proteins
- Docs
- Perl not yet supported