prokka
https://github.com/tseemann/prokka
Perl
:zap: :aquarius: Rapid prokaryotic genome annotation
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- Issues
- Prediction of tRNAs
- Allowed process substitution as input
- Add support for BCFtools .gff format
- Allow --proteins to take an existing indexed BLAST database
- Use dustmasker to annotate low complexity regions
- Remove XML::Simple dependency
- How to update HMM databases
- Use GNU-parallel to run prodigal faster
- Add information about plasmid annotation
- Remove Time::Piece dependency
- Docs
- Perl not yet supported