prokka
https://github.com/tseemann/prokka
Perl
:zap: :aquarius: Rapid prokaryotic genome annotation
Triage Issues!
When you volunteer to triage issues, you'll receive an email each day with a link to an open issue that needs help in this project. You'll also receive instructions on how to triage issues.
Triage Docs!
Receive a documented method or class from your favorite GitHub repos in your inbox every day. If you're really pro, receive undocumented methods or classes and supercharge your commit history.
Perl not yet supported1 Subscribers
Add a CodeTriage badge to prokka
Help out
- Issues
- Use indexed BLAST DB if already exists
- How to disable Excluding CDS which overlaps existing RNA
- no /pseudo gene in prokka-genbank_to_fasta_db
- URLs for MAXCONTIGIDLEN limit
- rRNA (partial) predicted by Barrnap
- Mitochondrial mode for plants
- Please rename your contigs or use --centre XXX to generate clean contig names
- Adding support for partial genes
- Missing short genes
- Add option to take NCBI template file for tbl2asn
- Docs
- Perl not yet supported