moscot
https://github.com/theislab/moscot
Python
Multi-omic single-cell optimal transport tools
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- Issues
- Sankey diagram and transition matrix issue
- SinkhornProblem star policy wrong problem order
- Negative cost in OTTOutput
- Neural Updates: PolicyDataLoader replaced with the old dataloading scheme and Quad terms added
- Examples to be written
- `.impute` consumes too much memory
- Refactoring moscot to include moscot.neural
- No error to check convergence in output of SpatioTemporalProblem
- change `batch_size` in `sparsify`
- Docs
- Python not yet supported