ncov
https://github.com/nextstrain/ncov
Python
Nextstrain build for novel coronavirus (nCoV)
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- Issues
- Use (new) augur clades functionality to simplify workflow
- Use (upcoming) color scale customisations
- Document case studies to guide interpretation of SARS-CoV-2 evolution based on Nextstrain analyses
- Tree building failed problem
- Incorporate sample size in logistic growth model fit
- Report Augur versions on error without `--use-conda`
- Add docs explaining available config.yaml & builds.yaml options
- A way to see what's in the read more branch tooltip
- Revisit hardcoded exclusion list
- Allow users to disable clock filter in augur refine rule
- Docs
- Python not yet supported