ncov
https://github.com/nextstrain/ncov
Python
Nextstrain build for novel coronavirus (nCoV)
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- Issues
- Issues/Features for Build Shepherd `parse_metadata` Script
- Raise a meaningful error when "focus" priorities field in subsampling rule isn't a valid key
- Revise description of the overall runtime for the tutorial to reflect "hands on" time vs. run time
- Include description of reasonable machine requirements at the beginning of the tutorial
- Different tree topologies when running the same data
- TREEtime computational bottleneck
- Compare results using masking of De Maio et al
- Heatmap coloring [Feature request]
- Follow-up on issues #365, with feature requests
- [Feature request] Use GISAID deep link URLs in metadata.tsv
- Docs
- Python not yet supported