fauna
https://github.com/nextstrain/fauna
Python
RethinkDB database to support real-time virus analysis
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- Issues
- Fauna upload and download scripts for seasonal corona viruses
- argument parser in upload.py
- Suggest using direct clinical sample sequence for MEX_CIENI551 Zika genome
- implement caching for geo lookups
- Sort out why Texas/50 is being dropped
- fauna uploads fail in python 3 unicode error
- Update download_all to work with segments
- Allow uploads of non-HI assay types.
- Pull genbank files with Accession numbers
- Docs
- Python not yet supported