fauna
https://github.com/nextstrain/fauna
Python
RethinkDB database to support real-time virus analysis
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- Issues
- Support pandas version 2
- seasonal flu "virus" records should be indexed by isolate id instead of strain name
- Update ingest for VIDRL flat files
- Generate list of new titers references on each new ingest
- Revisit ingestion of VIDRL flat files
- Decouple data curation and upload
- Parse VIDRL human sera pool measurements
- Publish to pypi and then bioconda
- script/delete_records: Add option to match fields with regex pattern
- tdb/elife_upload: Update assay_date parsing
- Docs
- Python not yet supported