augur
https://github.com/nextstrain/augur
Python
Pipeline components for real-time phylodynamic analysis
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Help out
- Issues
- Update language around snakemake install
- merge: Support sequences
- Uncaught error when root not in tree.
- Should `parse-genbank-location` automatically fix region/locality mix ups?
- Speed up augur filter without replacing Pandas
- Speed up augur filter by replacing Pandas
- Speed up augur filter
- Add sqlite3 cli to augur's bioconda recipe once augur merge PR is merged
- Pick a meaning of TSV and use it consistently
- Fix curate internal quotes take 2
- Docs
- Python not yet supported