augur
https://github.com/nextstrain/augur
Python
Pipeline components for real-time phylodynamic analysis
Triage Issues!
When you volunteer to triage issues, you'll receive an email each day with a link to an open issue that needs help in this project. You'll also receive instructions on how to triage issues.
Triage Docs!
Receive a documented method or class from your favorite GitHub repos in your inbox every day. If you're really pro, receive undocumented methods or classes and supercharge your commit history.
Python not yet supported38 Subscribers
View all SubscribersAdd a CodeTriage badge to augur
Help out
- Issues
- Augur TreeTime Error. What am i doing wrong?
- ENH: allow export to validate schema for a specific version of auspice
- fix: upper case root sequence for ancestral reconstruction
- Export fails validation without useful error message when using key for `metadata-id-column` for coloring as well
- Improved ancestral translation validation
- Numpy deprecation warnings for pandas imports
- `augur curate passthru` can add double quotations
- Metadata reader doesn't handle parsing errors: `pandas.errors.ParserError: Error tokenizing data. C error: Expected 57 fields in line 502, saw 58`
- Allow precise date ranges
- feat: support treetime ambiguous date format
- Docs
- Python not yet supported