augur
https://github.com/nextstrain/augur
Python
Pipeline components for real-time phylodynamic analysis
Triage Issues!
When you volunteer to triage issues, you'll receive an email each day with a link to an open issue that needs help in this project. You'll also receive instructions on how to triage issues.
Triage Docs!
Receive a documented method or class from your favorite GitHub repos in your inbox every day. If you're really pro, receive undocumented methods or classes and supercharge your commit history.
Python not yet supported38 Subscribers
Add a CodeTriage badge to augur
Help out
- Issues
- curate apply-geolocation-rules: Allow rule overrides
- Add examples for weighted sampling with multiple columns including month/week
- Register subparsers recursively
- CLI: Use raw descriptions
- Improve rendering of CLI documentation
- Also accept "region" as synonym of "source" for gb files?
- CI/release: Run tests on build artifacts
- Improve help text of CLI options
- `augur merge` is slow to read in metadata
- filter: Deprecate `--output` and `-o`
- Docs
- Python not yet supported