augur
https://github.com/nextstrain/augur
Python
Pipeline components for real-time phylodynamic analysis
Triage Issues!
When you volunteer to triage issues, you'll receive an email each day with a link to an open issue that needs help in this project. You'll also receive instructions on how to triage issues.
Triage Docs!
Receive a documented method or class from your favorite GitHub repos in your inbox every day. If you're really pro, receive undocumented methods or classes and supercharge your commit history.
Python not yet supported38 Subscribers
View all SubscribersAdd a CodeTriage badge to augur
Help out
- Issues
- Review Pyright rule exceptions
- filter: Improve speed of `--output-strains` and `--output-metadata`
- Number of Nt changes is different from number of mutations (divergence)
- export: Add option to extend the default lat/longs
- pip/conda dependency version constraints not guaranteed in all environments
- Make command line option headings linkable
- Add docs regarding bootstraps
- export multiple trees
- WIP [refine] unique internal node names
- Support pandas version 2
- Docs
- Python not yet supported