augur
https://github.com/nextstrain/augur
Python
Pipeline components for real-time phylodynamic analysis
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Help out
- Issues
- Rename `master` to `main`
- DEV_DOCS: Remove hardcoded default branch names
- Remove `authors` hard-coding in `augur export`
- Update changelog
- Investigate why CI takes 50% longer for Python 3.12
- Support Python 3.13
- Remove Python 3.8 support
- Add internal changes to changelog to improve visibility for developers and give credit
- parse: crash on invalid dates "0", "99999" instead of handling gracefully as intended
- Replace use of internal, non-public pandas API in parse.fix_dates
- Docs
- Python not yet supported