ncbi-genome-download
https://github.com/kblin/ncbi-genome-download
Python
Scripts to download genomes from the NCBI FTP servers
Triage Issues!
When you volunteer to triage issues, you'll receive an email each day with a link to an open issue that needs help in this project. You'll also receive instructions on how to triage issues.
Triage Docs!
Receive a documented method or class from your favorite GitHub repos in your inbox every day. If you're really pro, receive undocumented methods or classes and supercharge your commit history.
Python not yet supported1 Subscribers
Add a CodeTriage badge to ncbi-genome-download
Help out
- Issues
- Pseudogenes download
- Filenames with genus, species and strain?
- Reference sequence
- problems downloading genome
- Some RefSeq genomes not being downloaded
- Not downloading suppressed or replaced Refseq assembly accessions
- .faa.gz files not being downloaded for bacteria
- Checking if RefSeq genome available or not without downloading?
- Metadata and download
- High memory consumption (50 GB) for genbank bacteria
- Docs
- Python not yet supported