quast
https://github.com/ablab/quast
AMPL
Genome assembly evaluation tool
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- Issues
- Running quast with apython or bash script: ERROR! File not found (contigs)
- which file extensions allowed for `metaquast.py -r`
- Integrate depth information into QUAST analysis?
- invalid syntax (memory.py, line 271)
- genomes from quast_downloaded_references in a more general location
- Structural variations and misassemblies
- No snp data
- Error running QUAST with reads
- ERROR! exception caught! in QUAST v5.2.0
- Contigs with duplicate descriptions in FASTA file get ignored
- Docs
- AMPL not yet supported