quast
https://github.com/ablab/quast
AMPL
Genome assembly evaluation tool
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- Issues
- unknown error while running QUAST on mac
- Qutils reformatting and optimization
- Python 2 is no longer supported. Are there plans to migrate QUAST to Python 3 only codebase?
- Different # total reads for same fastq file
- metaquast: unaligned reference genomes not shown in output `report.html`
- Impossible to analyse multiple contig files on Python>=3.8
- download icarus consensus sequence
- Dockerfile fails to build due to setuptools dropping support for python2
- Quast 5.1.0rc1 install failure on CentOS 8
- ImportError: No module named joblib2 ERROR! exception caught!
- Docs
- AMPL not yet supported